PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_03271

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 421aa MW: 46507.2 Da PI: 9.942

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_03271	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	198	221	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+dCg+ F ++nL+ H t H PEQU_03271 198 FSCSDCGEIFMKSENLELHRTTrH 221 89*****************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.388	198	226	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	200	221	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	8.06E-21	223	420	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.1E-10	225	420	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
RTSTTEEKKI PLTPSSCLLQ RSFSESTMAG TRKTREKKAK KHSDQKEIYE EEGNPTPRRA 60 LTSFFTCRYH QVATAGGEGN KKKCKRIGCS GTLCKLRENS KILLRPVAAS SPESCKRRVS 120 VSGGGSTRSM KAPLCEINGA ISSSSSSTSL GATPSFSSLG GSFRGMHLRR LSGCYECHMA 180 VDPIHGVVRD SSLRTTMFSC SDCGEIFMKS ENLELHRTTR HAVSELGSDD NSRNIVEIIF 240 QSSWLKKQAP TCQIDRILKI HNSEKTIARF EEYRNNIKNK ASKLAKKYPR CIADGNELLR 300 FHCTTFTCSL GLHGSTNLCG TIPKCRICSI IRDGIKTDAL GRIRTMATSG RAHNLAQSSS 360 ENEKRGMLVC RVIAGRIKRN QDSSEEFDSV LGSSALYSSL DEIFVFNPKA ILPCFVVIYR 420 A

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

RTSTTEEKKI PLTPSSCLLQ RSFSESTMAG TRKTREKKAK KHSDQKEIYE EEGNPTPRRA  60
LTSFFTCRYH QVATAGGEGN KKKCKRIGCS GTLCKLRENS KILLRPVAAS SPESCKRRVS  120
VSGGGSTRSM KAPLCEINGA ISSSSSSTSL GATPSFSSLG GSFRGMHLRR LSGCYECHMA  180
VDPIHGVVRD SSLRTTMFSC SDCGEIFMKS ENLELHRTTR HAVSELGSDD NSRNIVEIIF  240
QSSWLKKQAP TCQIDRILKI HNSEKTIARF EEYRNNIKNK ASKLAKKYPR CIADGNELLR  300
FHCTTFTCSL GLHGSTNLCG TIPKCRICSI IRDGIKTDAL GRIRTMATSG RAHNLAQSSS  360
ENEKRGMLVC RVIAGRIKRN QDSSEEFDSV LGSSALYSSL DEIFVFNPKA ILPCFVVIYR  420
A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020595113.1	0.0	uncharacterized protein LOC110035218
TrEMBL	A0A2I0WIC6	0.0	A0A2I0WIC6_9ASPA; Uncharacterized protein
STRING	GSMUA_Achr5P01120_001	1e-156	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-92	C2H2-like zinc finger protein