PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_03822

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

TCP

Protein Properties

Length: 230aa MW: 24376.2 Da PI: 9.7114

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_03822	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.4	5.9e-39	34	128	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.........k 89 ++kk++ +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as++ +++ss s+as s+ + PEQU_03822 34 PAKKQPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTIPASFStSSSSSISNAS---SPstfilgkrlR 128 689******************************************************************99833333333333...222346554431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.2E-34	40	130	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	40	94	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MANSDPPGAA TTTAPHLITQ TSSPNNQNQL SHPPAKKQPA KDRHSKVDGR GRRIRMPIIC 60 AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGSGTI PASFSTSSSS SISNASSPST 120 FILGKRLRAD EDAPTKEESV GNGPPSGLWA VPTRADFGGQ FWSFAAPEMV LPTAMGRYVS 180 QPMDELSGAR VENYVPLAQG HHLNLLASFS GAAAAPASAG SNGRREDEHR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020589712.1	1e-169	transcription factor TCP21-like
Swissprot	Q9FMX2	1e-64	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1D6ZNF6	1e-167	A0A1D6ZNF6_PHAEQ; TCP transcription factor
STRING	XP_010249637.1	4e-71	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-53	TCP family protein