PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_03888
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GATA
Protein Properties Length: 108aa    MW: 12219.2 Da    PI: 10.174
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_03888genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.2e-181447134
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                C++C   kTp+WR gp g+ktLCnaCG++y++ +
  PEQU_03888 14 CTHCDIQKTPQWRAGPMGPKTLCNACGVRYKSGR 47
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-17858IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-151245IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.0551244IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-151271No hitNo description
CDDcd002021.68E-121370No hitNo description
PfamPF003204.1E-161448IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401439IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MKKEDEYVPS VRKCTHCDIQ KTPQWRAGPM GPKTLCNACG VRYKSGRLFP EYRPAASPTF  60
VPAVHSNSHK KVVEMRLRGL EMVGNNGGKE VTVAAKNCDL LQYIRRRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020570577.12e-73GATA transcription factor 4-like
SwissprotQ9SV307e-38GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A2I0WYA42e-64A0A2I0WYA4_9ASPA; GATA transcription factor 8
STRINGGSMUA_Achr2P02830_0013e-49(Musa acuminata)
STRINGGSMUA_Achr9P20700_0011e-47(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-40GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]