PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_04552
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family WRKY
Protein Properties Length: 474aa    MW: 51910.1 Da    PI: 8.1701
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_04552genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.66.1e-34224282160
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+k
  PEQU_04552 224 VDDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGKHNHPK 282
                 59****************************************.***************85 PP
2WRKY104.55.7e-33393451159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC+v+k+ver+++dpk+v++tYeg+Hnh+
  PEQU_04552 393 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYGGCSVRKHVERASKDPKAVITTYEGKHNHD 451
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-30221283IPR003657WRKY domain
SuperFamilySSF1182904.71E-27222283IPR003657WRKY domain
SMARTSM007744.3E-38224282IPR003657WRKY domain
PfamPF031062.8E-26225281IPR003657WRKY domain
PROSITE profilePS5081124.558225283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-37378453IPR003657WRKY domain
SuperFamilySSF1182901.31E-29385453IPR003657WRKY domain
PROSITE profilePS5081137.838388453IPR003657WRKY domain
SMARTSM007743.9E-38393452IPR003657WRKY domain
PfamPF031063.1E-26394451IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MFRLGGTLLL ELLHPFSMEE NIIAEAKRPS VSLPSCPTVE SLFRLEPAEA SPNPMNLVSS  60
FFSEDPESEC RSFSQLLAGA VTSPTARTAA EEVAGDRRGR GLNLGQGRPM NMLVGQSPFF  120
TAATDLSPGG LLDFPAMFAS NSGQYGLAHQ HATHSQLQMH MPPENPSPLL SASLSQSFPT  180
AKLSKVVHVS PMTLDSNTHS SEAAIASLSD QIPRPMPIVV DKPVDDGYNW RKYGQKQVKG  240
SEYPRSYYKC THPNCPVKKK VERSLDGQVT EIIYKGKHNH PKPPSNKRGK DANMSNGAAE  300
LNGHNVFATN SDSLSHGNAI TGLSKRDRES GNGAYEQLSG SSDGEEVGDH DGMDERGYFG  360
DPDQKKRMME SASHRTVTEP RIIVQTTSEV DLLDDGYRWR KYGQKVVKGN PHPRSYYKCT  420
YGGCSVRKHV ERASKDPKAV ITTYEGKHNH DVPAARNSSH NPPPPPLHPM ARNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-39224454878Probable WRKY transcription factor 4
2lex_A2e-39224454878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578727.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-122WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2I0WHC50.0A0A2I0WHC5_9ASPA; Putative WRKY transcription factor 3
STRINGXP_010258215.11e-156(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-118WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]