PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_04805
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 157aa    MW: 17152.3 Da    PI: 10.218
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_04805genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.2e-172574255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +++GVr +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a   l+g
  PEQU_04805 25 QFRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYLLRG 74
                79*****99.**********9...336*********************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.08E-252483No hitNo description
PROSITE profilePS5103222.2732582IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-212583IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-302583IPR001471AP2/ERF domain
SMARTSM003803.2E-362588IPR001471AP2/ERF domain
PfamPF008473.9E-102670IPR001471AP2/ERF domain
PRINTSPR003671.4E-112637IPR001471AP2/ERF domain
PRINTSPR003671.4E-116484IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MERREEGRKP PPQPPATAAG RREKQFRGVR MRKWGKWVAE IREPNKRSRI WLGSYSTPVA  60
AARAYDTAVY LLRGRSARLN FPEEIEVEEP TGDFGGGITA ASIRKKASEV GARVDAQAGV  120
LPAAAAAAVA VAAPPPSRSW KYPDLNLEPS PETSDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-161887777Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020701538.14e-74ethylene-responsive transcription factor RAP2-9-like
SwissprotO221741e-40ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A455LAE43e-81A0A455LAE4_9ASPA; Ethylene-responsive transcription factor RAP2-like protein
STRINGXP_008776525.14e-53(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.16e-39DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]