PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05026
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NF-YA
Protein Properties Length: 175aa    MW: 19473.2 Da    PI: 10.703
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05026genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.83.6e-331773158
   CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                +ep+YVNaKQy++Il+RRq+Rak+e ekk+  ksrkpylheSRh hA+rR+Rg+gGrF
  PEQU_05026 17 EEPVYVNAKQYHGILRRRQSRAKAELEKKI-VKSRKPYLHESRHLHAMRRARGCGGRF 73
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-371576IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.8931676IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-281873IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-241941IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068602141IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.7E-245073IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
LVGIPHARMP LPLEMAEEPV YVNAKQYHGI LRRRQSRAKA ELEKKIVKSR KPYLHESRHL  60
HAMRRARGCG GRFLNTKKND ADSSNTSSSA SFGYEALLSN TTANPDSAGT MMPALQGVLK  120
PHKRNSNSDG YQHSSGLQLS PFHASLVEKM DEADFSAQRR ADLLLNQPKK RALAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-231781266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020590586.11e-126nuclear transcription factor Y subunit A-9-like isoform X2
TrEMBLA0A2I0W3288e-71A0A2I0W328_9ASPA; Nuclear transcription factor Y subunit A-1
STRINGXP_008790783.12e-62(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-38nuclear factor Y, subunit A9