PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05110
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 97aa    MW: 10606.8 Da    PI: 6.5244
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05110genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.4e-121058348
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     +W++ Ed+ + +a + +G     +W+++a+ +g g+t  ++++++q +l
       PEQU_05110 10 KWSAKEDKEFERALATYGEQtpnRWEKVAAAIGGGKTVADVRLHYQLLL 58
                     8*****************99**************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.34358IPR017877Myb-like domain
SMARTSM007171.0E-10760IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-13966IPR009057Homeodomain-like
PfamPF002499.1E-111057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-71059IPR009057Homeodomain-like
CDDcd001674.50E-101058No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASSYATASK WSAKEDKEFE RALATYGEQT PNRWEKVAAA IGGGKTVADV RLHYQLLLDD  60
INSIESGLVP FPNYRPHPSP PTAAAAAASF LNDDRQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-23175174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020590756.19e-67protein RADIALIS-like 4
SwissprotF4JVB81e-25RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A2I0WW262e-48A0A2I0WW26_9ASPA; Protein RADIALIS-like 1
STRINGXP_008812249.19e-29(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-27RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]