PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_05337

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C3H

Protein Properties

Length: 330aa MW: 36240.8 Da PI: 8.564

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_05337	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.8	5.8e-11	21	45	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C +++rtGtC yG+rC+++H+ PEQU_05337 21 GKRDCAYYLRTGTCGYGERCRYHHP 45 7899********************9 PP
2	zf-CCCH	31.9	2.3e-10	68	94	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 y+++ C +f++tGtCk+G++Ck++H++ PEQU_05337 68 YGQPFCEYFLKTGTCKFGSSCKYHHPR 94 56666********************96 PP
3	zf-CCCH	40.9	3.3e-13	114	140	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++e+C++f++tG Ck+G +CkF+H++ PEQU_05337 114 PGEEECSYFMKTGKCKFGLTCKFHHPQ 140 589**********************97 PP
4	zf-CCCH	39.2	1.2e-12	273	299	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff+rtG+Ck+G+ C+++H+p PEQU_05337 273 PGQPECQFFMRTGQCKFGAACRYHHPP 299 5789*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.859	19	47	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-5	19	46	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-8	21	45	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.46E-7	22	48	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-5	25	45	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.42E-7	66	95	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-6	67	94	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.427	67	95	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-8	69	94	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-5	72	94	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.3E-6	113	140	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.155	113	141	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-10	115	140	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-6	116	141	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.5E-4	119	139	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-7	272	299	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.324	272	300	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-10	274	299	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	276	299	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.6E-4	278	298	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MWRLELGGGG NRGGGLPERP GKRDCAYYLR TGTCGYGERC RYHHPLDRVS TQVAGPARLV 60 AGEYPERYGQ PFCEYFLKTG TCKFGSSCKY HHPRQGDGSV QLVLLNSYGY PLRPGEEECS 120 YFMKTGKCKF GLTCKFHHPQ TTSASMPSPA PVFYPMVPTT SIATPQQYPE VGVWQVGRSS 180 SALSGAYMPS SYGPVLFSPR VLPVPGWNAY PTPINESASS GAQQSTQVEP LYWQHSQLSS 240 SASAYSGSYP LVTSLVGPST NNNQIEQNLP QRPGQPECQF FMRTGQCKFG AACRYHHPPN 300 WSITATNCSL NPLGLPLRPV SPFLSLQDNE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020589517.1	0.0	zinc finger CCCH domain-containing protein 6-like isoform X5
Swissprot	Q5NAW2	1e-108	C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBL	A0A2I0W3X4	1e-168	A0A2I0W3X4_9ASPA; Zinc finger CCCH domain-containing protein 32
STRING	XP_008796231.1	1e-133	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2761	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	9e-95	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Friedrichs G,Fikri M,Guo Y,Temps F Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8. J Phys Chem A, 2008. 112(25): p. 5636-46 [PMID:18512897] Ning H,Gong C,Li Z,Li X Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis. J Phys Chem A, 2015. 119(18): p. 4093-107 [PMID:25868004]