PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_05338

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C3H

Protein Properties

Length: 183aa MW: 20566.9 Da PI: 9.311

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_05338	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.7	2e-08	140	162	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++ + GtCk+G +CkF H+ PEQU_05338 140 QPCAYYTQHGTCKFGRTCKFDHP 162 69********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.88E-6	135	165	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.1E-4	136	163	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.901	136	164	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-6	140	162	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.9E-5	140	161	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MVLSQRKYVL DLLTETSMLE CKPAVSLIDQ KTMLNAEFVG VILIFWKSKK QSVVVRSTVE 60 AEYKVIALGV TKIMWLKALL IVNHHFNQLK RILHYINGTK SVGLPIHCST INIISYSDSD 120 WAGSPTDRKS TFGYYAFGAQ PCAYYTQHGT CKFGRTCKFD HPISTFGYNS ASLIDVPAAP 180 YPF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	7e-13	C3H family protein