PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_05558

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB_related

Protein Properties

Length: 154aa MW: 18408.1 Da PI: 5.4517

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_05558	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	6.6e-08	11	53	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r rW+ eEde l ++v+++G +W a+++ +R + c rw+ PEQU_05558 11 RRRWSSEEDEALRKYVAEHGEYDWGN-AEELF-KRRRSACYARWR 53 78****************9999.66666.566667888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.378	6	60	IPR017930	Myb domain
SuperFamily	SSF46689	2.31E-14	8	108	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-4	10	58	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-11	13	65	IPR009057	Homeodomain-like
Pfam	PF13921	1.0E-11	14	69	No hit	No description
CDD	cd00167	4.72E-4	19	53	No hit	No description
PROSITE profile	PS50090	5.39	57	114	IPR017877	Myb-like domain
SMART	SM00717	1.3	61	116	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-6	66	109	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MSERERLSRR RRRWSSEEDE ALRKYVAEHG EYDWGNAEEL FKRRRSACYA RWRYGLRSTV 60 AQRPLTDEEK TILWQLYEKL GASWNAIRRR TQSDYRFPSA RTELDIKNYI EQVLLERAQD 120 PDRNQNDVND NEGNLEAPGE DIDRNNEEAG SHAN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020589715.1	1e-108	myb-related protein 305-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48920.1	1e-08	myb domain protein 45