PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05560
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 162aa    MW: 19252.2 Da    PI: 6.5257
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05560genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-091961145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     r rW+ eEde l ++v+++G+++W+  a+++  +R++  c +rw+
       PEQU_05560 19 RRRWSSEEDEVLRKYVAEHGKEDWHG-AEKLL-KRSGRGCFERWR 61
                     78************************.88887.8*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9161468IPR017930Myb domain
SuperFamilySSF466891.55E-1616100IPR009057Homeodomain-like
SMARTSM007170.00131866IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-152187IPR009057Homeodomain-like
PfamPF139217.6E-112273No hitNo description
CDDcd001671.46E-72261No hitNo description
PROSITE profilePS500904.76265122IPR017877Myb-like domain
SMARTSM007172.169124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-488137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MRPPGTPPIS ERERQPRTRR RWSSEEDEVL RKYVAEHGKE DWHGAEKLLK RSGRGCFERW  60
RYGLRSTVAE HPLTDEEKTI LWQLYQRFGD SWCAIRRCIR RDNRFSAMRS EFDIKNYIEQ  120
VLLERAQDPN RNPNDVNDND GNLEAPREDI DQNNEEAGSH GN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020589688.11e-117myb-related protein 305-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-10myb domain protein 79