PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05640
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 177aa    MW: 20177.5 Da    PI: 7.023
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05640genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-051537123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+++F+++  L  H++ H
  PEQU_05640 15 FSCNYCHRVFTTSQALGGHQNGH 37
                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.1E-41341IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.45E-61342No hitNo description
PfamPF139121.5E-61439IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3651542IPR007087Zinc finger, C2H2
PROSITE patternPS0002801737IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSNVEEGLMQ AARVFSCNYC HRVFTTSQAL GGHQNGHRRE RELVKRAQRH AQLLANPMHP  60
SLRFTSPYNE RSFSFVYGLE SAGHHLLTVP LPMMNPNPFY HQPYSLPSQY YGERRGDIRL  120
SRFNEAILSE KMPSSSSTNL EMVLFTGSSG NGDYNDGIEN NGRDEEKRDE VDLSLHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020574550.11e-130zinc finger protein GIS-like
TrEMBLA0A2I0VUS93e-79A0A2I0VUS9_9ASPA; Zinc finger protein 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.12e-16zinc finger protein 7