PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_05681

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

HD-ZIP

Protein Properties

Length: 108aa MW: 12696.6 Da PI: 10.0218

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_05681	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.6	1.2e-19	16	69	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le F k+r++ +++ +LA +lgL+ +qV vWFqNrRa++k PEQU_05681 16 KKRRLSDDQVRFLEMNFGKERKLESSRKVHLAIELGLDPKQVAVWFQNRRARWK 69 56689************************************************9 PP
2	HD-ZIP_I/II	119	2.5e-38	16	98	2	84
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 kkrrls++qv++LE++F +e+kLe++rKv+la eLgl+p+qvavWFqnrRAR+k+kqlE +y +L++++da+ e++rLe+ev PEQU_05681 16 KKRRLSDDQVRFLEMNFGKERKLESSRKVHLAIELGLDPKQVAVWFQNRRARWKSKQLEDEYVRLRSSHDAVLIEKCRLESEV 98 9*******************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.904	11	71	IPR001356	Homeobox domain
SMART	SM00389	1.0E-17	13	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.48E-18	14	73	IPR009057	Homeodomain-like
Pfam	PF00046	4.8E-17	16	69	IPR001356	Homeobox domain
CDD	cd00086	1.48E-14	16	72	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-18	22	70	IPR009057	Homeodomain-like
PRINTS	PR00031	1.8E-5	42	51	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	46	69	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.8E-5	51	67	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MKIVDDGEMD VAGEGKKRRL SDDQVRFLEM NFGKERKLES SRKVHLAIEL GLDPKQVAVW 60 FQNRRARWKS KQLEDEYVRL RSSHDAVLIE KCRLESEVRF SPIPQSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	71	RRARWKSKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020574740.1	1e-65	homeobox-leucine zipper protein HOX12-like
Swissprot	A2XDK5	2e-36	HOX12_ORYSI; Homeobox-leucine zipper protein HOX12
Swissprot	Q10QF2	2e-36	HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBL	A0A2I0W6L6	1e-55	A0A2I0W6L6_9ASPA; Homeobox-leucine zipper protein HOX14
STRING	XP_008795628.1	8e-42	(Phoenix dactylifera)
STRING	XP_008806205.1	6e-42	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-38	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Gao S,Fang J,Xu F,Wang W,Chu C Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1. Plant Cell, 2016. 28(3): p. 680-95 [PMID:26977084]