PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05800
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 704aa    MW: 76329.2 Da    PI: 6.9953
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05800genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07284304526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G C++Gd C +aHg
  PEQU_05800 284 PCPDFRK-GACRRGDMCEYAHG 304
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.2E-1728156IPR020683Ankyrin repeat-containing domain
CDDcd002046.35E-1430141No hitNo description
PfamPF127961.3E-831129IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.62663139IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00366393IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.204.7E-1663143IPR020683Ankyrin repeat-containing domain
SMARTSM002480.04198130IPR002110Ankyrin repeat
PROSITE profilePS5008811.51498133IPR002110Ankyrin repeat
SMARTSM003564.0E-6279305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4283306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582284306IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5284304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4312342IPR000571Zinc finger, CCCH-type
SMARTSM0035664314337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
AKISLTELKK TMNGLNVEID DTFASVLELA ANNDVDGFKE YIDRNPSAVD AVGDWYGRKK  60
VIERRTPLMV AATYGSLDVL NLILKLSSAD INRYCGPDKT TALHCAASGG SLNVVKAVKI  120
LLSAGADPNG VDANGDRPVD VISVPRKLSN VKAALEDLLG SSGGAVSEIH HQSLRVSTSA  180
SNSLSLSSST EEDGSPSSDS TSSPMTGKFQ ELPSMPEKKE YPIDPSLPDI KNCAYTTDEF  240
RMFSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPDFRK GACRRGDMCE  300
YAHGVFECWL HPAQYRTRLC KDGTNCARRV CFFAHTNEEL RPLYISTGSA VPSPRSSVSS  360
AMGLMPGSPS SVSAIMSSFT PPMSPSANTI SHNSLNWQQP NVPALHLPGS NLQSSRLRSS  420
LNARDIQLDD YLMQDYETQQ LINDLFISRI GSSAGNRIAR SKNLNGSNLD DLFSAELSLS  480
PRYNNSEQGA MFSPSHKAAI LNQFQQQQQS LLSPIKTGMF SPKTTMDQPI PGHSSLLQAS  540
LGLSSPGRMS PRSLDAASPL SSRLTAFAQR EKQQQQSLRS HSSRELGAAA AAVVGSPVSS  600
SWSRLGSSSR TIDWGVNGED LGQLRRSSSF ELRSSGEEPD VSWVHSLVKE SPPEKPLATS  660
AGHDSLASRS SNPNDDSSGQ IDSHDHAAVL GAWLEQMQLD QLVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020574628.10.0zinc finger CCCH domain-containing protein 24-like
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2I0W4I50.0A0A2I0W4I5_9ASPA; Zinc finger CCCH domain-containing protein 24
STRINGXP_008778438.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]