PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06068
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 731aa    MW: 81218.3 Da    PI: 4.5038
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06068genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.5e-15124210998
                 HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++ +++ l+lp +  + +      ++ ++ + d+++r+W++++ y +++ +++lt+GW+ F+ ++ L +gD+vvF+  +++++  +v+ +r
  PEQU_06068 124 NYKSKSFLSLPESAGRVFhP--LGTGEEVDVFDLNNRRWRFQHFYGGNPAKHMLTEGWSYFALSKMLVAGDVVVFM--RDEDGVILVGCRR 210
                 34445569999999866653..3356689999********************************************..5578877777765 PP
2B345.71.2e-144895701296
                 HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 +++ l+lp +   ++ g++e ++++ + d++  +W++++ ++++++r++lt+GW+ F++++ L +gD vvF   g++e+   v+ 
  PEQU_06068 489 RESFLSLPESAG-RIFGEPEAGQEVDVFDLNDGRWRFRHVFEGNPQRHLLTDGWSYFASSKMLVAGDEVVFI--GDDEGIIIVGC 570
                 456699**9998.5655667788************************************************9..55566455554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-14115210IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-18115210IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-5115212IPR003340B3 DNA binding domain
PROSITE profilePS5086310.757116212IPR003340B3 DNA binding domain
CDDcd100176.69E-15117202No hitNo description
PfamPF023621.8E-13124210IPR003340B3 DNA binding domain
PfamPF065079.0E-5265328IPR010525Auxin response factor
Gene3DG3DSA:2.40.330.101.9E-15478571IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.066478574IPR003340B3 DNA binding domain
SuperFamilySSF1019361.7E-13479571IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-12479558No hitNo description
SMARTSM010197.8E-5479574IPR003340B3 DNA binding domain
PfamPF023626.5E-12489570IPR003340B3 DNA binding domain
PfamPF065073.1E-5621685IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MPSKIDKGKS PAAAGESLSI NPTIWKELAV NSPALPRTGS SVYYFCNGHA EQCPSFPQDL  60
YTAFTFPCHL AAVNLHADPT TEQAFAPPPP AAAAAELSSP AMDATPIAGG VISVAITLTK  120
SETNYKSKSF LSLPESAGRV FHPLGTGEEV DVFDLNNRRW RFQHFYGGNP AKHMLTEGWS  180
YFALSKMLVA GDVVVFMRDE DGVILVGCRR CGDDEGGEAP AIKGSSNRSC RFDAEARKKR  240
EDLEMVLRAL RWAEEDGEGV VEGKYYPDTK LPVYVVEKEV VDEALKVKWA SGMCVGKRWE  300
RANGLMFWLY GTISSLSLES ADTPWRMLEV IWDETDKKTR ENPWDVKPIF SVITQKRDEK  360
VQIEASADNK GEEAPSTASE SHAIDFIIWK ELAARSIELP RAGSCVYYFC DGHAEQCSAF  420
PPGLYTAFTF PCYLAAIDFD ADPTTEQVYA TFTLTTADFS STPLDTSISG GGLISVATTL  480
TKGETNYQRE SFLSLPESAG RIFGEPEAGQ EVDVFDLNDG RWRFRHVFEG NPQRHLLTDG  540
WSYFASSKML VAGDEVVFIG DDEGIIIVGC RRCGDDGDGG DDEDGLIEGS YRTRRKREET  600
ERVFRALRWA EEDGEGVVEA RYYPDTKLPV YVVEKEVVDE ALKVQWTPGM RVCKKWETAN  660
GLIFWLFGTL DSLSLDSADT PWRMLEIIWD ETNMKTRENP WEVNPIPLVS ISKPDKLIQN  720
DPATVSQVIS T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-262470623357Auxin response factor 1
4ldy_B2e-262470623357Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020574105.10.0auxin response factor 10-like
TrEMBLA0A2I0VNK21e-116A0A2I0VNK2_9ASPA; Auxin response factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.13e-32auxin response factor 17