PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_06169

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 156aa MW: 17819.7 Da PI: 10.9918

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_06169	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.1	1.5e-38	27	126	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rr+C++dC+lap+fpa++p +f+nvh+lFG+sn+lk+lk++ ++ ++++m+s+++++++ra+dPv G++++il+l+ q+++l+ael+ + + PEQU_06169 27 ACAACKYQRRRCTSDCILAPHFPANNPLQFRNVHRLFGVSNILKILKRVAPQLHKETMTSIIMQSNIRAQDPVGGCYRFILDLKFQIDRLSAELQFVLN 125 7*********************************************************************************************98876 PP DUF260 100 e 100 + PEQU_06169 126 Q 126 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	28	No hit	No description
PROSITE profile	PS50891	23.65	26	127	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-37	27	122	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MTKTHKSSSS TTTTTTTTTS TSTSTSACAA CKYQRRRCTS DCILAPHFPA NNPLQFRNVH 60 RLFGVSNILK ILKRVAPQLH KETMTSIIMQ SNIRAQDPVG GCYRFILDLK FQIDRLSAEL 120 QFVLNQLAFY RPQVRPKSRI CNVLFRLKNS IFQKIY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-26	17	130	1	114	LOB family transfactor Ramosa2.1
5ly0_B	9e-26	17	130	1	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020574048.1	8e-94	LOB domain-containing protein 7-like
Swissprot	Q9LRW1	9e-35	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A2I0W608	4e-49	A0A2I0W608_9ASPA; LOB domain-containing protein 22
STRING	XP_008779803.1	9e-42	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-36	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]