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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PEQU_06209 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 203aa MW: 23743.4 Da PI: 9.151 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 24.5 | 8.6e-08 | 25 | 113 | 3 | 86 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86
Y++YA+++GF+vrk++ + ++++i++++f k ++++e+ + + ++ + + ++ C ++ + +kd+++++ +l++eH+
PEQU_06209 25 YCAYAHQIGFTVRKDHVSFWPNSKKIKTKDFIWGKVDFKKNEQGAlfytrKLNSIFEAELQHDLCGLAVECSATKDSEFYIRNLDSEHT 113
9***************************************999998865444445588899999************************6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 6.1E-6 | 25 | 113 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 203 aa Download sequence Send to blast |
MCIDPIADSL LRTVVHNEKK AYEQYCAYAH QIGFTVRKDH VSFWPNSKKI KTKDFIWGKV 60 DFKKNEQGAL FYTRKLNSIF EAELQHDLCG LAVECSATKD SEFYIRNLDS EHTGRPWIVK 120 VDKSNSKITC ICKMGLLCSH SLRMLSHENI TKISEKYLLL RWSVHEKRDI YNSYRYKPLK 180 DSQTSPSCIT GLIYQTHVYK LSY |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
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| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020595714.1 | 1e-66 | protein FAR1-RELATED SEQUENCE 1-like | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G27110.2 | 2e-06 | FAR1-related sequence 3 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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