PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06219
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family FAR1
Protein Properties Length: 209aa    MW: 24286.8 Da    PI: 10.0388
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06219genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1509.6e-1615101390
        FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 Y++YA+ vGF vrk+++++  ++++i++++f C k  +++e++ +  + + ++a  rt  + +++   + +g+w v+k+ + HnH+la
  PEQU_06219  15 YCAYAHYVGFFVRKDHNSYCPNSKNIKTKDFICGKADHKKESSLT-GTVKLRKADMRTRSQSMVRYPIDVEGNWTVKKFIESHNHPLA 101
                 9***********************************999999988.88888999999999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1315101IPR004330FAR1 DNA binding domain
SMARTSM005750.0071176203IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
LRTAVHNDQE AYESYCAYAH YVGFFVRKDH NSYCPNSKNI KTKDFICGKA DHKKESSLTG  60
TVKLRKADMR TRSQSMVRYP IDVEGNWTVK KFIESHNHPL AESGDKHLLH FSRKIRIRAT  120
DAYNFMATEV RGWRTSNARK EMHKILWSTT FNNEIFGMGI LSTQQSESTN NVNFEITFSC  180
KKFKMMGILC SHSLYVLNVA QIKQIPQKY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020592994.12e-59uncharacterized protein LOC110033378
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1212587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-06FAR1 family protein