PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_06363

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 270aa MW: 31515.4 Da PI: 9.7555

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_06363	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41	6.4e-13	33	111	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y+ YA++vGF+v+k+++++ +++++ + +++ C k +++e++++ + ++a r+gCk +++ + v+k+ ++HnH+la PEQU_06363 33 YRVYAHHVGFTVQKDHTTYWSNSKKLKIKDYICGKASYKKESNST---VKFRKADMRIGCKVMVRFAVT------VAKFIKNHNHPLA 111 99*******************************9999998877...7888999*****99998......*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-10	33	111	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MQSCEATHVC NDLIAEKFLS SIVHNEQEAY ESYRVYAHHV GFTVQKDHTT YWSNSKKLKI 60 KDYICGKASY KKESNSTVKF RKADMRIGCK VMVRFAVTVA KFIKNHNHPL AESGDKHLLR 120 SSRMISELNA DVLRSMTGSR IRATHAYNFI ATEFEGVEHL ECIKRDAFNF IQREKTKSYL 180 WVTCYKKFEI MGLLCSYALF VLSVAKIKVI SEKYFFLRWS IHAKRDMYYR FDCRDLKDSG 240 LNNVSSSSLL FTSCFQKFVY QLINRARGNE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020574582.1	6e-93	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020592540.1	3e-92	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I0VPA5	4e-42	A0A2I0VPA5_9ASPA; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2I0VS86	1e-42	A0A2I0VS86_9ASPA; Protein FAR1-RELATED SEQUENCE 5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-09	FAR1-related sequence 5