PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06412
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family SBP
Protein Properties Length: 256aa    MW: 28606.7 Da    PI: 5.858
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06412genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.49.2e-242453578
                ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP 35 vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q 
  PEQU_06412  2 VGGQEQRFCQQCSRFHLLMEFDEVKRSCRKRLDGHNRRRRKPQV 45
                7899*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114120.401143IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.65E-21147IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.7E-13130IPR004333Transcription factor, SBP-box
PfamPF031102.3E-16242IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVGGQEQRFC QQCSRFHLLM EFDEVKRSCR KRLDGHNRRR RKPQVEATNA GNLYSTQHGS  60
RFTSYPQNFA SAGIDPAWSS MVKLEEGTLY PMLPPPINHF VDRVQQPPSH HFAATFDPNY  120
KEDKQFFLHD HTSRMAIEPT TACQPLLNTI SSAAESSSNG LMFSDRLSQV FDSDCALSLL  180
SSSAQTSGIN QSHMGQPLLS NLHYGGYSHS PMEEEHVGTV LVPDSGETDL HCQSMFQVGD  240
EEGSDCGSES IPFSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-131424384squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12542KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572090.10.0squamosa promoter-binding-like protein 18
TrEMBLA0A2I0WFU61e-155A0A2I0WFU6_9ASPA; Squamosa promoter-binding-like protein 18
STRINGXP_008801848.12e-83(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-21SBP family protein