PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06474
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family RAV
Protein Properties Length: 333aa    MW: 36277.1 Da    PI: 10.1982
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06474genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.4e-1357105155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGV   + +grW A+I++      ++r++lg+f  + eAa+a++aa+++++g
  PEQU_06474  57 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNLEREAARAYDAAAQRFRG 105
                 78****9888.8*********3.....5**********99*************98 PP
2B397.87e-31172273195
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k  tpsdv+k++rlv+pk+ ae+h       gg+ ++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gLk+gD+v F++++  +++l
  PEQU_06474 172 FDKSVTPSDVGKLNRLVIPKQQAEKHfslpgvgGGEGAKGVLLGFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGDTVGFYRSKGGDGQL 270
                 899*****************************97788899**************************************************987788877 PP

                 EEE CS
          B3  93 vvk 95 
                 ++ 
  PEQU_06474 271 YIE 273
                 765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.42E-1457113No hitNo description
SuperFamilySSF541714.45E-1757113IPR016177DNA-binding domain
PROSITE profilePS5103220.16558113IPR001471AP2/ERF domain
SMARTSM003807.0E-2858119IPR001471AP2/ERF domain
PfamPF008474.3E-958105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-2158113IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.9E-37164278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.19E-30169273IPR015300DNA-binding pseudobarrel domain
CDDcd100174.28E-27170275No hitNo description
PROSITE profilePS5086313.789172278IPR003340B3 DNA binding domain
PfamPF023622.4E-27172274IPR003340B3 DNA binding domain
SMARTSM010194.3E-21172282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDSSSSVDES SSSSDPCAAI LSPPPPPPPP PLQRMGSGSS TLTLAEPPSE SRKLPSSQYK  60
GVVPQPNGRW GAQIYEKHQR VWLGTFNLER EAARAYDAAA QRFRGRDAAT NFPPLSPDAY  120
ELAFLFSRSK AEVVDMLRKH TYLDELHHSH LRQSPPPSLH PSASKPAREH LFDKSVTPSD  180
VGKLNRLVIP KQQAEKHFSL PGVGGGEGAK GVLLGFEDGG GKVWRFRYSY WNSSQSYVLT  240
KGWSRFVKEK GLKAGDTVGF YRSKGGDGQL YIECRIRASG SGGAAPVKVM RLFGVDIVKA  300
AVAVNENGKR GLEAELRRTG AGTWFKKQCV VGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-4816927811118DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572117.10.0AP2/ERF and B3 domain-containing protein Os05g0549800-like
SwissprotQ8RZX91e-118Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A1S6YG040.0A0A1S6YG04_PHAEQ; TEM AP2/B3 transcription factor family protein
STRINGXP_009613275.11e-124(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.26e-97related to ABI3/VP1 2