PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_06547

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 97aa MW: 11325.8 Da PI: 6.3808

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_06547	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	44.8	3.5e-14	1	57	45	101
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +l++lp ++r +a+++++ eA++r++dPvyG+++ i lq++++++++ela++k+++ PEQU_06547 1 MLQQLPLHDRAQAADAIATEAHWRVQDPVYGCTERIVCLQHEISKAQNELAVMKAQI 57 799*************************************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.589	1	57	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-12	1	54	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MLQQLPLHDR AQAADAIATE AHWRVQDPVY GCTERIVCLQ HEISKAQNEL AVMKAQIAIH 60 IAHHEKQQHS EAQYYQCYLK DNDSFVPYWP NLRPDFI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020571888.1	2e-67	LOB domain-containing protein 24-like
TrEMBL	A0A2I0W0U9	1e-28	A0A2I0W0U9_9ASPA; LOB domain-containing protein 12
STRING	XP_008801576.1	5e-17	(Phoenix dactylifera)
STRING	Sb07g026800.1	8e-17	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27534	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-15	LOB domain-containing protein 24