PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06548
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family WRKY
Protein Properties Length: 354aa    MW: 39474.9 Da    PI: 6.4243
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06548genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.8e-31169227259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  PEQU_06548 169 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYSSEHNHP 227
                 699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.856163229IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-30166229IPR003657WRKY domain
SuperFamilySSF1182903.92E-26167229IPR003657WRKY domain
SMARTSM007745.5E-37168228IPR003657WRKY domain
PfamPF031066.5E-26170227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MCDYFCQRMD QNNQGDLTDI FRNNNRTNND TWHLLPEPAA AFPPSSNNFG DPFVDVRDPL  60
LHELNTTNFF NSSDASACSD DQKMLLEEEG KSSIFSRMLQ ISPVIAGKMS AEIGHPRLVP  120
GDCGGGLQIS STRVQGIKRR KSQVKKVVCI PAPAAASGRP SGTGEVVPSD LWAWRKYGQK  180
PIKGSPYPRG YYRCSSSKGC SARKQVERSR TDPNMLVITY SSEHNHPWPT QRNALAGSTR  240
SQSSKINNPS TSRSSPHNLN QLKNIKEEHK ECSGSAIQIV KEEEGYEMEK AALFDSQEHD  300
FDDFFADLAE LDSSDPMNLI FSKLDGEERG RDHKSMDPFN IFDWGGEEGK KGFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-26141230280Disease resistance protein RRS1
5w3x_D8e-26141230280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020571994.10.0probable WRKY transcription factor 14
SwissprotQ9SA801e-72WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A2I0W0U40.0A0A2I0W0U4_9ASPA; Putative WRKY transcription factor 14
STRINGXP_008788702.11e-119(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-64WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]