PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06648
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 120aa    MW: 13579.2 Da    PI: 9.6586
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06648genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-202679356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k+++f++ q++ Le +Fe++ ++  +++++LAk+lgL+ rqV +WFqN+Ra++k
  PEQU_06648 26 KKRRFSEAQVKSLEVMFEEQAKLEPRKKQQLAKELGLEPRQVAIWFQNKRARWK 79
                5669*************************************************9 PP
2HD-ZIP_I/II118.73.2e-3825115191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrr+s+ qvk+LE +Fee+ kLep++K++la+eLgl+prqva+WFqn+RAR+k+kqlE+ y+aL + ydal+++ ++L ++++ L  ++
   PEQU_06648  25 EKKRRFSEAQVKSLEVMFEEQAKLEPRKKQQLAKELGLEPRQVAIWFQNKRARWKSKQLERAYAALSADYDALRSSYDTLLHQKNVLSMQV 115
                  69**********************************************************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.04E-19983IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-201481IPR009057Homeodomain-like
PROSITE profilePS5007117.2812181IPR001356Homeobox domain
SMARTSM003891.5E-172485IPR001356Homeobox domain
CDDcd000861.07E-152682No hitNo description
PfamPF000461.2E-172679IPR001356Homeobox domain
PRINTSPR000311.8E-65261IPR000047Helix-turn-helix motif
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PRINTSPR000311.8E-66177IPR000047Helix-turn-helix motif
PfamPF021831.2E-1081116IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MLSSSNSSSS GYENDAGSAA AVTGEKKRRF SEAQVKSLEV MFEEQAKLEP RKKQQLAKEL  60
GLEPRQVAIW FQNKRARWKS KQLERAYAAL SADYDALRSS YDTLLHQKNV LSMQVEGDSY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020571813.11e-76homeobox-leucine zipper protein HOX6
SwissprotQ651Z53e-37HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
SwissprotQ9XH353e-37HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBLA0A2I0WAN07e-53A0A2I0WAN0_9ASPA; Homeobox-leucine zipper protein HOX6
STRINGTraes_5BL_9C32B27E2.19e-39(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-28homeobox 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]