PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06760
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25205.1 Da    PI: 9.4179
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06760genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.21.9e-221763147
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                krien+  rqv fskRr+g++KKA ELS+LC+ae+ +++fs+ gk +
  PEQU_06760 17 KRIENEEARQVCFSKRRAGLFKKATELSILCGAEIGIVVFSPAGKPF 63
                79*****************************************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-34968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.562969IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-27978IPR002100Transcription factor, MADS-box
CDDcd002656.20E-361077No hitNo description
PRINTSPR004041.3E-201131IPR002100Transcription factor, MADS-box
PfamPF003191.0E-261865IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-203146IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-204667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVRKKRQSMG RQKIAMKRIE NEEARQVCFS KRRAGLFKKA TELSILCGAE IGIVVFSPAG  60
KPFSFGHPSL DYITRRFVGG GPAVVGQLCG SFVEGEKLQL LNQEHAGLME KLEEARRIRA  120
ELEADIAAQP VGPGLPCDVE VHEMSLEELD SFQKALEELR RKVTNRREEL DIQSMDTKMI  180
RPIVPPRLGY GGGYLGGYNG LYLTSGPAGG FYRHRPDLTV GFPVWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15978170MEF2 CHIMERA
6byy_B1e-15978170MEF2 CHIMERA
6byy_C1e-15978170MEF2 CHIMERA
6byy_D1e-15978170MEF2 CHIMERA
6bz1_A1e-15978170MEF2 CHIMERA
6bz1_B1e-15978170MEF2 CHIMERA
6bz1_C1e-15978170MEF2 CHIMERA
6bz1_D1e-15978170MEF2 CHIMERA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584544.11e-165agamous-like MADS-box protein AGL61
TrEMBLA0A2I0VT521e-106A0A2I0VT52_9ASPA; Agamous-like MADS-box protein AGL61
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-30AGAMOUS-like 61