PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06935
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MIKC_MADS
Protein Properties Length: 194aa    MW: 22656.1 Da    PI: 9.6031
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06935genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.62.5e-26959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +ri+n++ rqvtfskRrng+lKKA EL +LCdaev +i+fsst++ly+++s
  PEQU_06935  9 SRIDNTTTRQVTFSKRRNGLLKKARELAILCDAEVGLIVFSSTDRLYDFAS 59
                59***********************************************86 PP
2K-box72.81e-24971811499
       K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 + ++q+e+a L+++++nLq++ R+l+G d++ L lkeLq Le+q+e+sl+ iR+kK+++l+++ + l +k ++++een++L kkl+
  PEQU_06935  97 HLNWQKEAASLRQQLHNLQENYRQLMG-DVNGLGLKELQTLESQMETSLRVIRQKKDQVLIDEAQALHRKVDDMEEENMRLYKKLK 181
                 569************************.69*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.389161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-38160IPR002100Transcription factor, MADS-box
CDDcd002652.77E-42277No hitNo description
SuperFamilySSF554554.32E-31284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.15497188IPR002487Transcription factor, K-box
PfamPF014866.5E-2397180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGRGKIVMSR IDNTTTRQVT FSKRRNGLLK KARELAILCD AEVGLIVFSS TDRLYDFAST  60
SMKSVIERYS KVKEDHQLVM HSTSEIKNYQ TILFCAHLNW QKEAASLRQQ LHNLQENYRQ  120
LMGDVNGLGL KELQTLESQM ETSLRVIRQK KDQVLIDEAQ ALHRKVDDME EENMRLYKKL  180
KLSQQENMEL HLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22177177MEF2C
5f28_B2e-22177177MEF2C
5f28_C2e-22177177MEF2C
5f28_D2e-22177177MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584681.11e-126MADS-box transcription factor 23-like isoform X3
SwissprotQ6EP493e-82MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A2I0WQP25e-94A0A2I0WQP2_9ASPA; MADS-box transcription factor 27
STRINGXP_008800745.14e-85(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-76AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]