PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06954
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NF-YA
Protein Properties Length: 312aa    MW: 34593.4 Da    PI: 8.5642
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06954genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32189245158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy++Il+RR++Rakle+++k+ +k rkpylheSRh+hA++R+Rg+gGrF
  PEQU_06954 189 EEPIYVNAKQYHAILRRREHRAKLESQSKT-IKIRKPYLHESRHQHAMKRARGTGGRF 245
                 69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.3E-36187248IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.835188248IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.4E-27190245IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-24191213IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860193213IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.0E-24222245IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSDKDLQQDL VQSAYSYPSN SIPWWNSCGP HILLYPTTTS LFANMNPLAS DQIKQAGNQM  60
EQESSSTQST GCSYGELSKE SDDNHNELGL SAQSGSVQNK INDKGNEHAN EKLKEGQTKL  120
VLPEEKSQVL TGTTKFDYSQ SLSFIPYAYA DAQYTGGLAA YGSHAVVHPQ MMGMPPSSRF  180
ALSVQPSGEE PIYVNAKQYH AILRRREHRA KLESQSKTIK IRKPYLHESR HQHAMKRARG  240
TGGRFLNTKK LPELKSQHSS STAGAAHLSG SDIQQNLGFC SSDQQSQYER IIHGDCDGFF  300
NNAPKLRVPV NR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-21189249262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584548.10.0nuclear transcription factor Y subunit A-7-like
RefseqXP_020584549.10.0nuclear transcription factor Y subunit A-7-like
SwissprotQ9LVJ72e-39NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLA0A2I0WQR91e-151A0A2I0WQR9_9ASPA; Nuclear transcription factor Y subunit A-6
STRINGXP_008791883.12e-61(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.13e-37nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]