PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_07052

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

bHLH

Protein Properties

Length: 53aa MW: 6328.52 Da PI: 11.1578

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_07052	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.2e-12	4	44	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rRR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq PEQU_07052 4 QRRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 44 79***************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.821	1	43	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-9	4	44	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-13	4	51	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-13	4	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.57E-8	4	48	No hit	No description
SMART	SM00353	3.9E-8	4	49	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 53 aa Download sequence Send to blast
FSLQRRRERI NERLKILQNL VPNGTKVDIS TMLEEAVQYV KFLQLQIKVS KKK

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661366.2	2e-22	transcription factor bHLH54
Refseq	XP_016666544.1	2e-22	PREDICTED: transcription factor bHLH84-like
Refseq	XP_017645278.1	2e-22	PREDICTED: transcription factor bHLH84-like
Swissprot	Q7XHI9	5e-21	BH084_ARATH; Transcription factor bHLH84
Swissprot	Q84WK0	7e-21	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A4D9A4S0	3e-23	A0A4D9A4S0_SALSN; Uncharacterized protein
STRING	Pavir.Ia04640.1.p	1e-21	(Panicum virgatum)
STRING	OGLUM07G20330.1	1e-21	(Oryza glumipatula)
STRING	ORUFI07G21430.1	9e-22	(Oryza rufipogon)
STRING	OS07T0588400-00	9e-22	(Oryza sativa)
STRING	OB07G26210.1	8e-22	(Oryza brachyantha)
STRING	ONIVA07G18960.1	1e-21	(Oryza nivara)
STRING	OPUNC07G19390.1	9e-22	(Oryza punctata)
STRING	LPERR07G17840.1	8e-22	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP56240	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.3	9e-24	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]