PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_07102
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 221aa    MW: 25420.6 Da    PI: 6.2541
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_07102genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.3e-183285356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k+++++ eq+ +Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  PEQU_07102 32 KKRRLNMEQVMALEQNFELGNKLEPERKLQLAMALGLQPRQIAIWFQNRRARWK 85
                456899***********************************************9 PP
2HD-ZIP_I/II123.11.3e-3931121191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqv +LE++Fe  +kLeperK +la +Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lk +++a+k en++L++++++L++e+
   PEQU_07102  31 EKKRRLNMEQVMALEQNFELGNKLEPERKLQLAMALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKLQFEAIKLENDALHAQNRKLQAEI 121
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-192489IPR009057Homeodomain-like
PROSITE profilePS5007116.732787IPR001356Homeobox domain
SMARTSM003892.1E-173091IPR001356Homeobox domain
PfamPF000462.8E-153285IPR001356Homeobox domain
CDDcd000863.02E-143288No hitNo description
Gene3DG3DSA:1.10.10.601.2E-183494IPR009057Homeodomain-like
PRINTSPR000311.9E-55867IPR000047Helix-turn-helix motif
PROSITE patternPS0002706285IPR017970Homeobox, conserved site
PRINTSPR000311.9E-56783IPR000047Helix-turn-helix motif
PfamPF021831.2E-1287127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MARKRSVCFS GNLETCEAEE EVSDDCSQAG EKKRRLNMEQ VMALEQNFEL GNKLEPERKL  60
QLAMALGLQP RQIAIWFQNR RARWKTKQLE KDYDLLKLQF EAIKLENDAL HAQNRKLQAE  120
ILAIKGREAG ELLNLNKETE GSCSNRTENS SENCSLLNQN KKIEFFSAIR QPMISQFVQG  180
SSTPDLNCSK IENGINDEHF SNLLSGIETA FFHWPDHQNH H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17987RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575662.11e-162homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8S7W97e-73HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A2I0VZD71e-131A0A2I0VZD7_9ASPA; Homeobox-leucine zipper protein ATHB-13
STRINGXP_008797128.18e-96(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-70HD-ZIP family protein