PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_07132

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

G2-like

Protein Properties

Length: 247aa MW: 27680.2 Da PI: 6.7974

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_07132	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.8	1.8e-31	17	71	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt eLHe+Fv+av++LGG+ekAtPk +++lm v+gLtl+h+kSHLQkYRl PEQU_07132 17 KPRLKWTRELHEQFVDAVSELGGAEKATPKLLMRLMAVPGLTLYHLKSHLQKYRL 71 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.357	14	74	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-30	15	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.56E-15	17	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-21	17	72	IPR006447	Myb domain, plants
Pfam	PF00249	7.0E-7	19	70	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-16	101	149	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MPNRLDHHGP VLSADGKPRL KWTRELHEQF VDAVSELGGA EKATPKLLMR LMAVPGLTLY 60 HLKSHLQKYR LAKNRDPSTL TNDKKTKDDE LKNRNDKTQP QLNEAILQQI QIDVHRKLQE 120 QIEVQKHLQL RIEAQGKYLQ SVLKIAQETL AGYSSTLGTE AARSELSELV SVVETECLSS 180 SLNHGGLISK GNQNADSSMD SCLTSELFEL REKYAGQHKL EASSCSNPVN GRTAETRGEI 240 EEFDLNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-21	16	75	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-21	16	75	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-21	16	75	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-21	16	75	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-21	16	75	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-21	16	75	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-21	16	75	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-21	16	75	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020575610.1	0.0	myb-related protein 2-like isoform X1
Refseq	XP_020575611.1	0.0	myb-related protein 2-like isoform X1
Refseq	XP_020575612.1	0.0	myb-related protein 2-like isoform X1
Swissprot	Q9SQQ9	7e-59	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2I0VZF6	1e-134	A0A2I0VZF6_9ASPA; Myb family transcription factor APL
STRING	XP_008802581.1	2e-89	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11264	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	2e-53	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]