PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_07241
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ZF-HD
Protein Properties Length: 262aa    MW: 28292.4 Da    PI: 7.3871
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_07241genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.99e-3248102358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  +vrY+eClkNhA+ +GghavDGCgEf+++ geegt++al+CaAC+CHRnFHR++ e
   PEQU_07241  48 GVRYRECLKNHAVGIGGHAVDGCGEFTAA-GEEGTIDALRCAACNCHRNFHRKDLE 102
                  69**************************9.999********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2445102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-2849100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-2950100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1251100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.46E-20169243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-31173243IPR009057Homeodomain-like
TIGRFAMsTIGR015657.0E-26182238IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDFEENDNGE EEMDIPAYHP PPGNSGRPKQ GGAPDLPAGN FPRHSVGGVR YRECLKNHAV  60
GIGGHAVDGC GEFTAAGEEG TIDALRCAAC NCHRNFHRKD LEPGGGGDRS GFHSPYSPYY  120
RMPVGYLQYN QMGAAAAAGQ QRFVAHLGLP STSGGGLSRE EHEEVRGGGG GGLGASSSSS  180
GKKRFRTKFT PEQKNKMLAF ADRIGWRIQK SDEAEVQQFC EETSIKRHVF KVWMHNNKHT  240
IGKQAIDPSP PPLPLPSESI GH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-251832401875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575619.10.0zinc-finger homeodomain protein 1-like
SwissprotA2Z2597e-75ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A2I0VRF71e-130A0A2I0VRF7_9ASPA; ZF-HD homeobox protein
STRINGXP_010266504.15e-84(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-57homeobox protein 22