PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_07244
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25461 Da    PI: 7.9482
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_07244genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.86.7e-241056248
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                +i n + rqvtfskRr g++KKAeEL +LCdaev +i+fs tgkl++
  PEQU_07244 10 KIANATARQVTFSKRRRGLFKKAEELAILCDAEVGLIVFSATGKLFD 56
                699******************************************86 PP
2K-box591.9e-20901711899
       K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 + +l+ L +++ +  r++R++ GedL+ L+++eLq+Le+ Le++l+++ +kK e ++eqi+ l++k  +l een++Lr +++
  PEQU_07244  90 NGNLTILSNQVAEATRQLRNMRGEDLNGLTIQELQELEKTLETGLSRVTQKKGEQIMEQIKGLRNKGIQLMEENTKLRYQVA 171
                 556777899999999***************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.006161IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-29175IPR002100Transcription factor, MADS-box
CDDcd002651.12E-38275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-24323IPR002100Transcription factor, MADS-box
PfamPF003199.3E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.36686176IPR002487Transcription factor, K-box
PfamPF014863.4E-1792170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAREKIKIRK IANATARQVT FSKRRRGLFK KAEELAILCD AEVGLIVFSA TGKLFDLSNT  60
SMKEIIDRYN THSKNTTAGD LPSLDLQLEN GNLTILSNQV AEATRQLRNM RGEDLNGLTI  120
QELQELEKTL ETGLSRVTQK KGEQIMEQIK GLRNKGIQLM EENTKLRYQV AKMSNAGKQV  180
VVDLENALHE DGQSSESVTN VTHCGNLYEN EDTSDTCLKL GLSCSGWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-18173173MEF2C
5f28_B7e-18173173MEF2C
5f28_C7e-18173173MEF2C
5f28_D7e-18173173MEF2C
6byy_A9e-18173173MEF2 CHIMERA
6byy_B9e-18173173MEF2 CHIMERA
6byy_C9e-18173173MEF2 CHIMERA
6byy_D9e-18173173MEF2 CHIMERA
6bz1_A9e-18173173MEF2 CHIMERA
6bz1_B9e-18173173MEF2 CHIMERA
6bz1_C9e-18173173MEF2 CHIMERA
6bz1_D9e-18173173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575639.11e-166MADS-box transcription factor 22
RefseqXP_020575640.11e-166MADS-box transcription factor 22
SwissprotQ9XJ667e-85MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A2I7M8C51e-165A0A2I7M8C5_9ASPA; SVP
STRINGVIT_00s0313g00070.t011e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-70MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]