PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_07278

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

ERF

Protein Properties

Length: 170aa MW: 19413.9 Da PI: 7.9372

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_07278	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	67.6	2.3e-21	82	131	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIrdp+ r r +lg+f+taeeAa+a+++a+ +++g PEQU_07278 82 KYRGVRQRP-WGKWVAEIRDPR----RaVRKWLGTFDTAEEAARAYDKAAIEFRG 131 8******.******82....48**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.1E-14	82	131	IPR001471	AP2/ERF domain
SMART	SM00380	3.7E-35	82	143	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.4E-32	82	139	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.658	82	139	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-23	82	139	IPR016177	DNA-binding domain
PRINTS	PR00367	8.6E-12	83	94	IPR001471	AP2/ERF domain
CDD	cd00018	1.32E-31	85	138	No hit	No description
PRINTS	PR00367	8.6E-12	105	121	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MEPNPPTKRR LSAEQETSIL IESLIHVISG MPDDTAPTFS LPAVDNCKQC GVDGCLGCHF 60 FESSVLSEDK RSKRRKREKR IKYRGVRQRP WGKWVAEIRD PRRAVRKWLG TFDTAEEAAR 120 AYDKAAIEFR GARAKLNFSS VDQVIELTPT AGTTEEEISR ESPDEWIYLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-20	83	138	6	62	ATERF1
3gcc_A	2e-20	83	138	6	62	ATERF1
5wx9_A	2e-20	82	138	14	71	Ethylene-responsive transcription factor ERF096
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	78	RRKREK

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020575675.1	1e-123	ethylene-responsive transcription factor ERF109-like
Swissprot	Q9SZ06	2e-30	EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBL	A0A2I0WW74	2e-62	A0A2I0WW74_9ASPA; Ethylene-responsive transcription factor ERF109
STRING	BRADI3G38140.1	7e-49	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1242	36	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34410.1	2e-26	redox responsive transcription factor 1

Publications ? help Back to Top
Matsuo M,Oelmüller R REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling. Plant Signal Behav, 2015. 10(11): p. e1051279 [PMID:26479402] Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression. J Vis Exp, 2018. [PMID:26649488] Bahieldin A, et al. Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant. BMC Plant Biol., 2016. 16(1): p. 216 [PMID:27716054] Huang D,Lin W,Deng B,Ren Y,Miao Y Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis. Int J Mol Sci, 2018. [PMID:29112140] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]