PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_07312

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

BBR-BPC

Protein Properties

Length: 290aa MW: 32175.6 Da PI: 9.8536

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_07312	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	313.2	8.9e-96	1	290	1	301
GAGA_bind 1 mdddgsre.rnkg.yyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd..........maflqrdkalaernkalverdnkllalllv 87 mddd++ +n+g yy+ lk nlglqlm ++ erd+k+ + + e + + +r+ m+f rd + ++ +rd+ l +++ PEQU_07312 1 MDDDATLGiQNWGgYYRTP-PLKGNLGLQLMPTVGERDTKPFFSSV---EAGSGYLHREcgitepstmpMDF-GRDVWYHN------NRDSSKLLHVFQ 88 9999999999*788766.9****************76666...55666777777777778888.9***9......666554444444 PP GAGA_bind 88 enslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader 186 n +++ ++ + l+++ s +s q+ l++ ++ +e+ +l ++p++ +++ + kk++k ++++ k +k kk+kk +++k++++k+s + PEQU_07312 89 GNHH-QHSHSYESLLPEA-SSHSFQM-----LQQVEAPREEKAHLIEEPVVLQPDAEPSKKRSKG--QGRSSKPSKPKKVKKA-KTPKEENAKAS--GK 175 4432.3333455555554.5567888.....4444444334444555555555555555555553..3444455555555552.23444444444..46 PP GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDL 285 +++ kks+d+v+ng++lD s++P+PvC+CtG+++qCY+WG+GGWqSaCCtt+iS yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eG d+s p+DL PEQU_07312 176 ARSVKKSMDMVINGIDLDLSGMPTPVCTCTGQPQQCYRWGAGGWQSACCTTSISLYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGEDFSSPIDL 274 89********************************************************************************************* PP GAGA_bind 286 kdhWAkHGtnkfvtir 301 k +WAkHGtnkfvtir PEQU_07312 275 KPFWAKHGTNKFVTIR 290 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	7.6E-138	1	290	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	8.2E-101	1	290	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0050793	Biological Process	regulation of developmental process
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDDDATLGIQ NWGGYYRTPP LKGNLGLQLM PTVGERDTKP FFSSVEAGSG YLHRECGITE 60 PSTMPMDFGR DVWYHNNRDS SKLLHVFQGN HHQHSHSYES LLPEASSHSF QMLQQVEAPR 120 EEKAHLIEEP VVLQPDAEPS KKRSKGQGRS SKPSKPKKVK KAKTPKEENA KASGKARSVK 180 KSMDMVINGI DLDLSGMPTP VCTCTGQPQQ CYRWGAGGWQ SACCTTSISL YPLPMSTKRR 240 GARIAGRKMS QGAFKKVLEK LAGEGEDFSS PIDLKPFWAK HGTNKFVTIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00253	DAP	Transfer from AT2G01930	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020575528.1	0.0	protein Barley B recombinant-like
Swissprot	P0DH88	2e-82	BBRA_ORYSJ; Barley B recombinant-like protein A
Swissprot	P0DH89	2e-82	BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBL	A0A2I0WW46	0.0	A0A2I0WW46_9ASPA; Barley B recombinant-like protein B
STRING	XP_008787890.1	1e-116	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2211	36	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01930.2	2e-75	basic pentacysteine1

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]