PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08237
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 88aa    MW: 10118.2 Da    PI: 7.6848
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08237genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-091054345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT+   +l+ +a + + ++   +W  +ar +g g++++++++++ 
       PEQU_08237 10 TWTKKQNKLFERALAVYDKDtpeRWQNVARAVG-GKSAEEVRLHYE 54
                     7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.962661IPR017884SANT domain
SMARTSM007177.2E-8759IPR001005SANT/Myb domain
SuperFamilySSF466892.04E-12965IPR009057Homeodomain-like
CDDcd001671.94E-61057No hitNo description
Gene3DG3DSA:1.10.10.609.0E-51059IPR009057Homeodomain-like
PfamPF002493.1E-71054IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
NMASKNSAST WTKKQNKLFE RALAVYDKDT PERWQNVARA VGGKSAEEVR LHYELLVEDL  60
KFIESGHFPF PNYRSSGEKN TAGEEEQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-34277177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572564.12e-59protein RADIALIS-like 3
RefseqXP_020572565.12e-59protein RADIALIS-like 3
SwissprotQ6NNN02e-34RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A2I0VXE62e-48A0A2I0VXE6_9ASPA; Transcription factor RADIALIS
STRINGVIT_03s0063g02670.t012e-39(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.19e-36RAD-like 1