PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08240
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ZF-HD
Protein Properties Length: 257aa    MW: 28200.6 Da    PI: 8.9291
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08240genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.85.2e-283384359
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                 +++Y+eCl+NhAas Ggh++DGCgEfmp      +a+++kCaACgCHR+FHRre e+
   PEQU_08240 33 SLKYRECLRNHAASHGGHVLDGCGEFMPG-----SADTMKCAACGCHRSFHRREGES 84
                 579*************************6.....7899***************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.8E-243481IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.4E-243581IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-153580IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.7313681IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE patternPS0002806892IPR007087Zinc finger, C2H2
SuperFamilySSF466898.64E-20171241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-29176242IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-27180236IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRSSSPDLSL AAESGKGEGS NFRTTGIAGE PSSLKYRECL RNHAASHGGH VLDGCGEFMP  60
GSADTMKCAA CGCHRSFHRR EGESDHLFYR HHQHNGSNHS GGNRVAAGGR IPLLLPAPQL  120
APHQKHIHCF SPSPSAGMVA FGNTSGGTTT ESSSEELGLT PAGAMPGGFH MPPFVTPSSK  180
KRFRTKFTSE QKARMMDFAE RIGWRIQRQD EVDLDAFCAE VGVSRQVFKV WMHNNKHSIR  240
KQQEQQNREL QQPLQQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-241792381675ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572665.10.0zinc-finger homeodomain protein 6-like
TrEMBLA0A2I0VL921e-138A0A2I0VL92_9ASPA; ZF-HD homeobox protein
STRINGXP_008782488.12e-64(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-41homeobox protein 31