PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08294
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NF-YB
Protein Properties Length: 154aa    MW: 17344.5 Da    PI: 4.3632
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08294genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB643e-203721584
       NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84
                +i+k++lP + ++++d+++++ ec +efi +++sea++ c+re+++ti+++ +l al  lGf +y+e + 
  PEQU_08294  3 KIIKEMLPPDVRVARDTQDLLVECCVEFINLLSSEANEVCNREDKRTIAPEHVLKALEVLGFGEYIEDVY 72
                89****************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.93E-302120IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.2E-323121IPR009072Histone-fold
PfamPF008082.9E-17359IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MFKIIKEMLP PDVRVARDTQ DLLVECCVEF INLLSSEANE VCNREDKRTI APEHVLKALE  60
VLGFGEYIED VYSAYEQHKL ETLDSPKGVR YSGVEMTEEE AAAEQQRMFA EARARMNNGV  120
APQKEPEPDR GFAVPDRGFA VPDRGFDGVN ADHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B4e-31311323133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572549.11e-111protein Dr1 homolog isoform X1
SwissprotP495922e-68NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A2I0VLJ88e-82A0A2I0VLJ8_9ASPA; Protein Dr1 like
STRINGXP_008807401.14e-75(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.44e-54nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]