PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_08344

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 166aa MW: 18385.7 Da PI: 7.0688

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_08344	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141	3.8e-44	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+kll++l +++reda++sl+yeA+ar++dPvyG+vg i+ lqqq++ l++el+++++ PEQU_08344 14 PCAACKFLRRKCMQGCIFAPYFPPEEPQKFFNVHKIFGASNVTKLLNELLPHQREDAVNSLAYEADARMKDPVYGCVGAISVLQQQVQLLQKELDAANA 112 7*********************************************************************************************99886 PP DUF260 100 e 100 + PEQU_08344 113 N 113 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.257	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-43	14	111	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MSSYSSSSAS SNSPCAACKF LRRKCMQGCI FAPYFPPEEP QKFFNVHKIF GASNVTKLLN 60 ELLPHQREDA VNSLAYEADA RMKDPVYGCV GAISVLQQQV QLLQKELDAA NANLLKYACS 120 YCHPSAHAGH QQVLLPYHSS LQWSNNSDNE QMREKGGYVY GDVDGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-65	5	120	2	117	LOB family transfactor Ramosa2.1
5ly0_B	2e-65	5	120	2	117	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020572649.1	1e-122	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_020572651.1	1e-122	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_020572652.1	1e-122	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_020572653.1	1e-122	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_020572654.1	1e-122	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_020572655.1	1e-122	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_020594900.1	1e-122	protein LATERAL ORGAN BOUNDARIES-like
Swissprot	Q9FML4	2e-66	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2I0VID4	1e-81	A0A2I0VID4_9ASPA; Protein LATERAL ORGAN BOUNDARIES
STRING	XP_008464527.1	1e-69	(Cucumis melo)
STRING	XP_004173060.1	1e-69	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8813	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	4e-59	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]