PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_08495

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

HB-other

Protein Properties

Length: 217aa MW: 24376.7 Da PI: 8.7646

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_08495	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.8	2.2e-14	3	52	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t++q+++Le+++ ++ +s+++r+eLA k++L+ r +++WF N+R + k+ PEQU_08495 3 TPSQIDVLEKAYTVSSRLSEQMRQELALKTELSSREISMWFANKRFQGKQ 52 89*******************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.183	1	53	IPR001356	Homeobox domain
SMART	SM00389	1.7E-4	1	57	IPR001356	Homeobox domain
CDD	cd00086	6.54E-11	2	47	No hit	No description
SuperFamily	SSF46689	9.41E-12	2	53	IPR009057	Homeodomain-like
Pfam	PF00046	5.5E-12	3	52	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-12	3	52	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MKTPSQIDVL EKAYTVSSRL SEQMRQELAL KTELSSREIS MWFANKRFQG KQAHLLRESK 60 REDVHPLPIH SNPSGGGSGF VLAACHFMDS TMNEASVSER CSELIRPMGK TQVQQLMPKL 120 QKTHHELDPS VLTFMERKLG GRLIEDGPLV GMTFDPLPPG AFGSPLCSGN GISCLVQFFC 180 SFLLCSHKFL KILLIVLRVE YRILKCIKLL FGALCYM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020587731.1	1e-112	homeobox-DDT domain protein RLT2-like isoform X1
Refseq	XP_020587732.1	1e-112	homeobox-DDT domain protein RLT2-like isoform X2
Refseq	XP_020587733.1	1e-112	homeobox-DDT domain protein RLT2-like isoform X3
Refseq	XP_020587734.1	1e-112	homeobox-DDT domain protein RLT2-like isoform X4
TrEMBL	A0A2I0XE38	1e-82	A0A2I0XE38_9ASPA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	7e-21	Homeodomain-like transcriptional regulator