PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08600
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family LBD
Protein Properties Length: 189aa    MW: 20279 Da    PI: 8.4904
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08600genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.78.6e-43331321100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrrkC++dCv+apyf a+qp+kf  vh++FGasnv+kllk++p+++reda++sl+yeA++r+rdPvyG+vgvi+ l+++l++l+ el+ +++
  PEQU_08600  33 PCAACKFLRRKCQPDCVFAPYFLADQPQKFISVHRVFGASNVTKLLKEIPQKDREDAVNSLAYEADMRIRDPVYGCVGVISILHHELRKLQLELSFARS 131
                 7*********************************************************************************************99987 PP

      DUF260 100 e 100
                 e
  PEQU_08600 132 E 132
                 6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.74732133IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4233130IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
HMTSLTPPSS FPPTSPPPPP SSASGGSATA SSPCAACKFL RRKCQPDCVF APYFLADQPQ  60
KFISVHRVFG ASNVTKLLKE IPQKDREDAV NSLAYEADMR IRDPVYGCVG VISILHHELR  120
KLQLELSFAR SELARYQFNP PQPSADLWPG NQFGFDATAS VGFGMNVGGN LIFRAPSARA  180
TGGDGVGPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-48301368114LOB family transfactor Ramosa2.1
5ly0_B1e-48301368114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020587814.11e-137LOB domain-containing protein 6-like
SwissprotA1YKY73e-56IAL1_MAIZE; Protein IAL1
TrEMBLA0A2I0WSN33e-89A0A2I0WSN3_9ASPA; LOB domain-containing protein 6
STRINGVIT_00s0340g00090.t014e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.44e-48LBD family protein