PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08721
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 229aa    MW: 25692.9 Da    PI: 7.4375
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08721genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.11e-182466145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++ W++eEd +l++a+ + G++ W+ Ia++++ gRt++++k++w+
       PEQU_08721 24 KDTWSEEEDRILIQAHSEVGNK-WAEIAKRLP-GRTDNSIKNHWN 66
                     679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.945118IPR017930Myb domain
SuperFamilySSF466897.19E-27175IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-12230IPR009057Homeodomain-like
PROSITE profilePS5129427.9521973IPR017930Myb domain
SMARTSM007171.5E-182371IPR001005SANT/Myb domain
PfamPF002492.4E-172466IPR001005SANT/Myb domain
CDDcd001672.78E-142669No hitNo description
Gene3DG3DSA:1.10.10.605.9E-213167IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MLNGRIGKQC RERWHNHLRP NIKKDTWSEE EDRILIQAHS EVGNKWAEIA KRLPGRTDNS  60
IKNHWNATKR RQFARRRSRS TKHPKSSAGS LLQDYIKSLS LPNPSPAPPP RTNNQSSAST  120
AEPAPPLNSI SSSSWEYHDF SDVAQELMLL DRKEMDLMED VCAMDFFLDP LGCGGGSSLS  180
SSNVMRDRLE ECSLSTSSDE KVKKEMDLVE MICNSCSSFS SACDGMMAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-3527334105C-Myb DNA-Binding Domain
1msf_C4e-3527334105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020686563.11e-100transcription factor MYB98-like
TrEMBLA0A2I0WCD85e-99A0A2I0WCD8_9ASPA; Transcription factor MYB98
STRINGGSMUA_Achr3P19490_0017e-60(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-39myb domain protein 98