PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_08731

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 191aa MW: 20650.7 Da PI: 7.4227

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_08731	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132	2.5e-41	33	131	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++C lapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdP+yG++g i klq+q+ +l+a+la++++ PEQU_08731 33 PCAACKILRRRCVDKCLLAPYFPPTDPLKFTVAHRVFGASNIIKFLQDLPEVHRADAVSSMVYEANARLRDPIYGCAGAICKLQKQVTKLQAQLARTRA 131 7**********************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.359	32	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.8E-41	33	130	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MNLIDATSSS TSSPSPSPSP PLLTLTPPTI LSPCAACKIL RRRCVDKCLL APYFPPTDPL 60 KFTVAHRVFG ASNIIKFLQD LPEVHRADAV SSMVYEANAR LRDPIYGCAG AICKLQKQVT 120 KLQAQLARTR ADLLHVQTQH ANFLALLMAP SSLHPSPTID QSTFASPEFS YEGDGGDGGG 180 YAPIWEDSLW A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-39	26	134	4	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-39	26	134	4	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020585962.1	1e-139	LOB domain-containing protein 1
Swissprot	Q9LQR0	4e-64	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2I0XE83	1e-91	A0A2I0XE83_9ASPA; LOB domain-containing protein 1
STRING	XP_008795252.1	2e-73	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	2e-61	LOB domain-containing protein 11