PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08752
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 206aa    MW: 24019 Da    PI: 4.9245
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08752genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B385.54.7e-2744137190
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 f+k+ltpsdv+k++rlv+pkk+a+++      +    e+  l ++d+ +r W ++++y+k+s+++v+t+GW++Fvk+ +L+++D+vvF++  ++e+
  PEQU_08752  44 FQKELTPSDVGKLNRLVIPKKHATRYfppvtpN--CVEEHLLEFRDRMNRLWVFRYCYWKSSQSFVFTRGWNRFVKEMELRSKDTVVFYYCTEMEG 137
                 99************************9998543..446669************************************************9877555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-3241136IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-2243150No hitNo description
SuperFamilySSF1019367.06E-2643135IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-1844142IPR003340B3 DNA binding domain
PROSITE profilePS5086312.35144152IPR003340B3 DNA binding domain
PfamPF023626.7E-2444137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MIRDGSYESR LIEFIRTNHA SSSNGSGSDA PTMIDNGITF TEMFQKELTP SDVGKLNRLV  60
IPKKHATRYF PPVTPNCVEE HLLEFRDRMN RLWVFRYCYW KSSQSFVFTR GWNRFVKEME  120
LRSKDTVVFY YCTEMEGMNK KTFFMIDVLR GVGRSGSVEG ENPMEDAEGN ENSNEYEEEE  180
VKSGSLMDKE ESEGTQEMKL FGVWIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-304312913100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585973.11e-152AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6881e-43RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2I0WMV47e-82A0A2I0WMV4_9ASPA; AP2/ERF and B3 domain-containing transcription factor
STRINGXP_008800116.13e-53(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1971158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-44RAV family protein