PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08755
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 161aa    MW: 19360.3 Da    PI: 9.4881
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08755genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-1748135187
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 f k+l+ +    +++lvlp +  +++    k++++  l+++d+ +r We++++y+++ ++y++  GW++F+++ +L+++D+vvF++  +
  PEQU_08755  48 FHKKLILNGIEGQNILVLPHQA-RSYypPFKSTGGLPLVFRDRVNRPWEFQYCYNNSTQSYIFNMGWSKFANEMELRTKDTVVFYRCMD 135
                 677777777888899****886.5777*555567788************************************************6544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-1846134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-1547133IPR015300DNA-binding pseudobarrel domain
CDDcd100173.07E-1147132No hitNo description
PfamPF023622.2E-1448138IPR003340B3 DNA binding domain
PROSITE profilePS5086310.05248153IPR003340B3 DNA binding domain
SMARTSM010191.2E-448142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDMIRDGSYE RKLIDTVWSQ QRQYQYIGYL AMPTCLDAIP GFVFEEMFHK KLILNGIEGQ  60
NILVLPHQAR SYYPPFKSTG GLPLVFRDRV NRPWEFQYCY NNSTQSYIFN MGWSKFANEM  120
ELRTKDTVVF YRCMDWRNFP PKNFDMVDII RDANPKKPRR R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-14451405114B3 domain-containing transcription factor NGA1
5os9_B1e-14451405114B3 domain-containing transcription factor NGA1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585963.11e-120AP2/ERF and B3 domain-containing transcription factor At1g51120-like isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.14e-20RAV family protein