PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_08757

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Protein Properties

Length: 156aa MW: 18898.8 Da PI: 6.507

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_08757	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.3	1.6e-14	47	133	2	86
EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 k+lt+ d ++++l+lp+ + + ++ + ++ l ++d+ +++W + +iy + +++v+t GW+ Fv++ +L+++D+vvF++ + PEQU_08757 47 HKELTSTDLENQNMLILPNYVLPFFppfRSD-RAQFWLEFNDRMNKTWAFHYIYMTRIQSFVITMGWSLFVNEMELRAKDIVVFYVCS 133 5888888999999999998888666996444.56789***************9999************************9654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	1.49E-9	44	130	No hit	No description
SuperFamily	SSF101936	3.92E-13	45	136	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.5E-16	45	135	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	8.896	46	146	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.5E-12	47	134	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MIMDGSYEHR LIQFVSNQHR AYCYSDSIAM PTCLDTFQGV FYKKIYHKEL TSTDLENQNM 60 LILPNYVLPF FPPFRSDRAQ FWLEFNDRMN KTWAFHYIYM TRIQSFVITM GWSLFVNEME 120 LRAKDIVVFY VCSDRRIYPE EFFDMIDIIR GVRISQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020585808.1	1e-115	AP2/ERF and B3 domain-containing transcription factor At1g51120-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19711	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	3e-18	RAV family protein