PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08758
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 165aa    MW: 20586.8 Da    PI: 8.6483
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08758genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.3e-1546143189
                 EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                 f+k+lt sd   ++ l+lp +    +             +     +  ++++d+ +r+W +++ y+ + +r +lt+GW++Fv++ +L + D+vvF+  +
  PEQU_08758  46 FQKELTLSDLEHQNVLILPIDAR-PFfpqirsnrvqfwlE----FKDRMKFKDRMNRTWAFQYFYWSRFQRSILTRGWSKFVSEMELHAEDIVVFYQCW 139
                 78888888888888888875432.2224335445544431....3336999*********************************************777 PP

                 S.SE CS
          B3  87 r.se 89 
                 + ++
  PEQU_08758 140 DrRK 143
                 6444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1843142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-1344149No hitNo description
SuperFamilySSF1019362.16E-1544143IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-1346143IPR003340B3 DNA binding domain
PROSITE profilePS508639.10746158IPR003340B3 DNA binding domain
SMARTSM010196.4E-446158IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MIRDDSYELR LIHFVSDHIR NYRYRGPIEM PTCLDAIQEV FYKKMFQKEL TLSDLEHQNV  60
LILPIDARPF FPQIRSNRVQ FWLEFKDRMK FKDRMNRTWA FQYFYWSRFQ RSILTRGWSK  120
FVSEMELHAE DIVVFYQCWD RRKFPEEIFY MVDIIRGVRI TQDEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-1445138796B3 domain-containing transcription factor NGA1
5os9_B7e-1445138796B3 domain-containing transcription factor NGA1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585805.16e-97AP2/ERF and B3 domain-containing transcription factor At1g50680-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.13e-17RAV family protein