PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_08759

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Protein Properties

Length: 111aa MW: 13467.5 Da PI: 8.3181

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_08759	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.2	8.3e-15	2	92	1	88
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 f k+l+ d +++++lvlp++ + ++++ + +d++ rsW ++l+ +++++ yv+t+GWk+F ++ +L+++D+v+F+ ++ + PEQU_08759 2 FRKELLMGDITNENLLVLPNEAQ-PCfhpwNSNP-DELWFEYKDRRYRSWVFQLCRTNNPQIYVITTGWKKFFNEMELRVNDIVLFYGCKDmR 92 66777778888999999999873.3345774443.333566678888****************************************766634 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-15	1	92	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.14E-10	1	86	No hit	No description
SuperFamily	SSF101936	5.89E-15	2	96	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0082	2	97	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.389	2	102	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.6E-12	2	93	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MFRKELLMGD ITNENLLVLP NEAQPCFHPW NSNPDELWFE YKDRRYRSWV FQLCRTNNPQ 60 IYVITTGWKK FFNEMELRVN DIVLFYGCKD MRNFPCSSFS MIDVIRGVKN R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020585807.1	7e-79	AP2/ERF and B3 domain-containing transcription factor At1g50680-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-12	RAV family protein