PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08763
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 163aa    MW: 20047.1 Da    PI: 9.6275
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08763genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.8e-1554136989
                 HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
          B3   9 dvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                 d   ++ l+lp +  + +     ++ + ++ l ++d+ +r+W +++ y+ + +r +lt+GW++Fv++ +L++ D+vvF+  ++++
  PEQU_08763  54 DLEHQKVLILPIDA-RPFfprvRSN-RVQFWLEFKDRMNRTWAFQYFYWSRFQRSILTRGWSKFVSEMQLRADDIVVFYQCWDRR 136
                 44444545555332.2223443433.34468999*********************************************777644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-1943137IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-1244137No hitNo description
SuperFamilySSF1019361.41E-1544138IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.003146140IPR003340B3 DNA binding domain
PROSITE profilePS508639.47446152IPR003340B3 DNA binding domain
PfamPF023621.6E-1248137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MIRNGSYELK LIHFVSNHPR NYHYRGPIEM PSCMDAIQEV FYKKMFHKEL TLTDLEHQKV  60
LILPIDARPF FPRVRSNRVQ FWLEFKDRMN RTWAFQYFYW SRFQRSILTR GWSKFVSEMQ  120
LRADDIVVFY QCWDRRTHPE ETFDMVDIIR GLRITRDELQ GLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-1445132796B3 domain-containing transcription factor NGA1
5os9_B7e-1445132796B3 domain-containing transcription factor NGA1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585805.11e-120AP2/ERF and B3 domain-containing transcription factor At1g50680-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.19e-16RAV family protein