PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_08765

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Protein Properties

Length: 170aa MW: 20483.4 Da PI: 5.0276

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_08765	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.5	3.7e-16	55	147	1	90
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f k+l+ d +++++lvlp++ ++ ++++ + +d+++rsWe++l+ ++++++yv+t+GWk+F ++ +L+++D+v+F++ ++ ++f PEQU_08765 55 FRKELLMGDITNENLLVLPNEAQ-SCfqpfNSNP-DELWFEYKDRRNRSWEFQLCPTNNPQTYVITTGWKKFFNEVELRVNDIVLFYRCKDmRSF 147 667777888899999**9975.6669864443.445677789999**************************************88775555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.0E-18	53	150	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.31E-16	54	149	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.04E-12	54	153	No hit	No description
PROSITE profile	PS50863	10.701	55	155	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0013	55	155	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.0E-14	55	147	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MYDPDVIINM IRDGSYEPNY IEFLSNHYPS FRYSDSIVMP SSLDVIEGVL FKEMFRKELL 60 MGDITNENLL VLPNEAQSCF QPFNSNPDEL WFEYKDRRNR SWEFQLCPTN NPQTYVITTG 120 WKKFFNEVEL RVNDIVLFYR CKDMRSFPCS FFSMIDVIRG AKNHWMQRRY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020585801.1	1e-126	AP2/ERF and B3 domain-containing transcription factor At1g51120-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	3e-16	RAV family protein