PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_08768

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Protein Properties

Length: 191aa MW: 22716.8 Da PI: 6.1122

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_08768	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.3	6.8e-14	73	161	1	87
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+l+ d +++++v+p + ++ ++++++++ ++d+++rsW ++l y ++ + +t+GW++F ++ +L+++D+vvF++ ++ PEQU_08768 73 FRKELLLTDIQNQNLIVIPDLALLSFhpKNSNTGKRWFDFKDRTNRSWAFQLDYVNTTPDCAFTTGWNKFFNEMELCANDTVVFYRCKN 161 6677778888999999*999877779666678889*************999999***********************7665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.6E-15	70	163	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.04E-9	72	158	No hit	No description
SuperFamily	SSF101936	1.9E-13	72	162	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.206	73	173	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.8E-11	73	163	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MRNLFLTSVT IHESLFQNMY SLEVIINMIK DRSYEPNYIN FLWNHYPNFR YGDSLAMPTS 60 MYAIDGTFSK EIFRKELLLT DIQNQNLIVI PDLALLSFHP KNSNTGKRWF DFKDRTNRSW 120 AFQLDYVNTT PDCAFTTGWN KFFNEMELCA NDTVVFYRCK NLQNFPDEFF NMIDVIRGIR 180 KPESRDGIEP H

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020585856.1	1e-143	AP2/ERF and B3 domain-containing transcription factor At1g51120-like
Refseq	XP_020585857.1	1e-143	AP2/ERF and B3 domain-containing transcription factor At1g51120-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-17	RAV family protein